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| Ten Hoopen, Petra; Pesant, Stephane; Kottmann, Renzo; Kopf, Anna; Bicak, Mesude; Claus, Simon; Deneudt, Klaas; Borremans, Catherine; Thijsse, Peter; Dekeyzer, Stefanie; Schaap, Dick M. A.; Bowler, Chris; Gloeckner, Frank Oliver; Cochrane, Guy. |
| Contextual data collected concurrently with molecular samples are critical to the use of metagenomics in the fields of marine biodiversity, bioinformatics and biotechnology. We present here Marine Microbial Biodiversity, Bioinformatics and Biotechnology (M2B3) standards for "Reporting" and "Serving" data. The M2B3 Reporting Standard (1) describes minimal mandatory and recommended contextual information for a marine microbial sample obtained in the epipelagic zone, (2) includes meaningful information for researchers in the oceanographic, biodiversity and molecular disciplines, and (3) can easily be adopted by any marine laboratory with minimum sampling resources. The M2B3 Service Standard defines a software interface through which these data can be... |
| Tipo: Text |
Palavras-chave: Data standard; Marine; Molecular; Biodiversity; Microbial; Bioinformatics; Reporting; Interoperability. |
| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00311/42266/41588.pdf |
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| Carval, Thierry; Thijsse, Peter; Ariyo, Christopher. |
| The WP6 objective is to design and implement the MaRINET 2 e-infrastructure. Within WP6, two key issues are addressed: “Data preservation” and “Data sharing within a VRE” (Virtual Research Environment) leading to these objectives: - Data preservation: a common policy compliant with international standards (RDA – Research Data Alliance) and European standards for Marine data (SeaDataNet) - Data access and service : a Virtual Research Environment (VRE) workplace based on common national and European e-infrastructures (such as SeaDataCloud) The MaRINET 2 e-infrastructure supports these via the following actions: - Collection and storage of MaRINET 2 experiment descriptions and results to secure their interoperability and long-term preservation -... |
| Tipo: Text |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00634/74608/74501.pdf |
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| Tanhua, Toste; Pouliquen, Sylvie; Hausman, Jessica; O’brien, Kevin; Bricher, Pip; De Bruin, Taco; Buck, Justin J. H.; Burger, Eugene F.; Carval, Thierry; Casey, Kenneth S.; Diggs, Steve; Giorgetti, Alessandra; Glaves, Helen; Harscoat, Valerie; Kinkade, Danie; Muelbert, Jose H.; Novellino, Antonio; Pfeil, Benjamin; Pulsifer, Peter L.; Van De Putte, Anton; Robinson, Erin; Schaap, Dick; Smirnov, Alexander; Smith, Neville; Snowden, Derrick; Spears, Tobias; Stall, Shelley; Tacoma, Marten; Thijsse, Peter; Tronstad, Stein; Vandenberghe, Thomas; Wengren, Micah; Wyborn, Lesley; Zhao, Zhiming. |
| Well-founded data management systems are of vital importance for ocean observing systems as they ensure that essential data are not only collected but also retained and made accessible for analysis and application by current and future users. Effective data management requires collaboration across activities including observations, metadata and data assembly, quality assurance and control (QA/QC), and data publication that enables local and interoperable discovery and access and secures archiving that guarantees long-term preservation. To achieve this, data should be findable, accessible, interoperable, and reusable (FAIR). Here, we outline how these principles apply to ocean data and illustrate them with a few examples. In recent decades, ocean data... |
| Tipo: Text |
Palavras-chave: FAIR; Ocean; Data management; Data services; Ocean observing; Standardization; Interoperability. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00509/62068/66248.pdf |
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